|
クラスの概要 |
| Acidity |
calculation of pH (acidity) of the optional solution. |
| ConcentrationAMP |
calculation of AMP concentration (conformed to mass conservation law)
[Adenosine]total_cell = [ATP]cell + [ADP]cell + [AMP]
[AMP] = [Adenosine]total_cell - [ATP]cell - [ADP]cell
|
| ConcentrationCyta2 |
Calculation of the concentration of Cytochrome a2+
[Cyt a2+] = [Cyt a]total/(1 + A_3/2)
where;
A_3/2 = 10^((Ema - Ema0)/Z) :ratio of oxidized cytochrome a3 to reduced cytochrome a3
|
| ConcentrationPi |
calculation of iorganic phosphate concentration (conformed to mass conservation law)
Pitotal = 3*[ATP]cell + 2*[ADP]cell + [AMP] + [PhosphoCreatine] + [Pi]cell + (3*[ATP]mito + 2*[ADP]mito + [Pi]mito) / Rcm
[Pi]cell = Pitotal - (3*[ATP]cell + 2*[ADP]cell + [AMP] + [PhosphoCreatine] + (3*[ATP]mito + 2*[ADP]mito + [Pi]mito) / Rcm)
|
| GradientP |
proton driving force
dP = 1/(1 - u) * dpH
|
| GradientpH |
proton gradient on mitochondrial inner membrane. |
| MassConservation |
calculation of molecular concentration conformed to mass conservation law
[A] = [A]total - [A']
|
| MassConservation2 |
calculation of molecular concentration conformed to mass conservation law
[A] = [A]total - [A']
|
| MembranePotential |
membrane potential on mitochondrial inner membrane. |
| MetalFreeConcentration |
free concentration of metal affinity molecule
[A]free = [A]total / (1 + [metal]free / kD)
|
| PartialPotential |
calcuration of partial potential. |
| PressureToConcentration |
calculation of concentration of gas-molecule from partial pressure. |
| RedoxPotential |
Calculation of the redox potential. |
| RedoxPotentialCyta |
Calculation of the redox potential of cytochrome a
Ema = Emc + dP * (2 + 2 * u) / 2
|
| VolumeRatio |
Calculation of volume ratio between cell and organella. |
| Zvalue |
calculation of z value. |