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パッケージ
org.simBio.core の使用

org.simBio.core を使用しているパッケージ
org.simBio simBio: biological DYNAMIC simulation platform. 
org.simBio.bio for the biologists. 
org.simBio.bio.cor   
org.simBio.bio.faber_rudy_2000.current   
org.simBio.bio.faber_rudy_2000.function   
org.simBio.bio.faber_rudy_2000.molecule   
org.simBio.bio.faber_rudy_2000.structure   
org.simBio.bio.function   
org.simBio.bio.henriquez_et_al_2001   
org.simBio.bio.himeno_et_al_2008   
org.simBio.bio.hodgkin_huxley_1952 Modifyed Hodgkin Huxley Squid Axon Model 1952 Explanation from CellML is as;
This is Hodgkin and Huxley's inspirational work on a mathematical description of currents through the membrane of a nerve fibre (axon) in a giant squid, and their application to the modelling of excitation in the nerve. 
org.simBio.bio.kurata_et_al_2005.complex   
org.simBio.bio.kurata_et_al_2005.current   
org.simBio.bio.kurata_et_al_2005.flux   
org.simBio.bio.kurata_et_al_2005.molecule   
org.simBio.bio.kuratomi_et_al_2003.current.carrier   
org.simBio.bio.kuzumoto_et_al_2007.contraction   
org.simBio.bio.kuzumoto_et_al_2007.current   
org.simBio.bio.kuzumoto_et_al_2007.current.carrier   
org.simBio.bio.kuzumoto_et_al_2007.current.cf   
org.simBio.bio.kuzumoto_et_al_2007.function   
org.simBio.bio.kuzumoto_et_al_2007.molecule   
org.simBio.bio.matsuoka_et_al_2003.complex   
org.simBio.bio.matsuoka_et_al_2003.current   
org.simBio.bio.matsuoka_et_al_2003.current.cf   
org.simBio.bio.matsuoka_et_al_2003.current.channel   
org.simBio.bio.matsuoka_et_al_2003.current.pipette   
org.simBio.bio.matsuoka_et_al_2003.current.potassium   
org.simBio.bio.matsuoka_et_al_2003.function The common functions among models 
org.simBio.bio.matsuoka_et_al_2003.molecule.buffer   
org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca   
org.simBio.bio.matsuoka_et_al_2003.molecule.enzyme   
org.simBio.bio.matsuoka_et_al_2004.exp   
org.simBio.bio.matsuoka_et_al_2004.function   
org.simBio.bio.matsuoka_et_al_2004.function.chemical   
org.simBio.bio.matsuoka_et_al_2004.molecule   
org.simBio.bio.matsuoka_et_al_2004.molecule.RespiratoryChain   
org.simBio.bio.matsuoka_et_al_2004.molecule.Transporter   
org.simBio.bio.matsuoka_et_al_2004.molecule.buffer   
org.simBio.bio.matsuoka_et_al_2004.molecule.enzyme   
org.simBio.bio.negroni_lascano_1996 The contraction model proposed by Negroni and Lascano, 1996. 
org.simBio.bio.negroni_lascano_1996.exp   
org.simBio.bio.oka_et_al_2006.function   
org.simBio.bio.oka_et_al_2006.function.kinetics   
org.simBio.bio.oka_et_al_2006.structure   
org.simBio.bio.sarai_et_al_2006.function   
org.simBio.bio.sarai_noma_2004 Single Na channel model, Sarai and Noma, 2004. 
org.simBio.bio.sarai_noma_2004.fourState   
org.simBio.bio.takeuchi_et_al_2006.current   
org.simBio.bio.takeuchi_et_al_2006.function   
org.simBio.bio.tenTusscher_et_al_2004.current   
org.simBio.bio.tenTusscher_et_al_2004.flux   
org.simBio.bio.tenTusscher_et_al_2004.function   
org.simBio.bio.terashima_et_al_2006.complex   
org.simBio.bio.terashima_et_al_2006.current.carrier   
org.simBio.bio.terashima_et_al_2006.current.cf   
org.simBio.bio.terashima_et_al_2006.current.potassium   
org.simBio.bio.terashima_et_al_2006.experiment Classes for experimental manipulation. 
org.simBio.bio.terashima_et_al_2006.function The common functions among models 
org.simBio.core The basal Classes of the simBio
simBioの基盤クラス群。 
org.simBio.core.integrator   
org.simBio.serialize serializer
直列化と復元 
org.simBio.serialize.xml XML serializer
 
org.simBio.sim.analyzer analyzers which inherit core.Analyzer,
core.Analyserを継承するクラス群 
org.simBio.sim.analyzer.csv CSV maker
計算結果をCSV形式で書き出します。 
org.simBio.sim.analyzer.csv.result   
org.simBio.sim.analyzer.graph   
org.simBio.sim.analyzer.graph.results   
org.simBio.sim.analyzer.graph.simple 2D Graph maker
計算結果を2次元グラフで表示する。 
org.simBio.sim.analyzer.measure   
org.simBio.sim.gui Graphical user interface
 
org.simBio.sim.ps   
org.simBio.util   
org.simBio.util.numerical   
org.simBio.util.numerical.methods   
 

org.simBio により使用される org.simBio.core のクラス
Composite
          Composite Pattern.
 

org.simBio.bio により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.cor により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.faber_rudy_2000.current により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.faber_rudy_2000.function により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.faber_rudy_2000.molecule により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.faber_rudy_2000.structure により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.function により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.henriquez_et_al_2001 により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.himeno_et_al_2008 により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.hodgkin_huxley_1952 により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.kurata_et_al_2005.complex により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.kurata_et_al_2005.current により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.kurata_et_al_2005.flux により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.kurata_et_al_2005.molecule により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.kuratomi_et_al_2003.current.carrier により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.kuzumoto_et_al_2007.contraction により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.kuzumoto_et_al_2007.current により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.kuzumoto_et_al_2007.current.carrier により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.kuzumoto_et_al_2007.current.cf により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.kuzumoto_et_al_2007.function により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.kuzumoto_et_al_2007.molecule により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.matsuoka_et_al_2003.complex により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.matsuoka_et_al_2003.current により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.matsuoka_et_al_2003.current.cf により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.matsuoka_et_al_2003.current.channel により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.matsuoka_et_al_2003.current.pipette により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.matsuoka_et_al_2003.current.potassium により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.matsuoka_et_al_2003.function により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
IResetBeforeCalc
          Mark for Reactor to reset before calculation
計算開始時にクリアする必要のあるリアクターにつけるマーク。
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
Variable
           
 

org.simBio.bio.matsuoka_et_al_2003.molecule.buffer により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.matsuoka_et_al_2003.molecule.enzyme により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.matsuoka_et_al_2004.exp により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.matsuoka_et_al_2004.function により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.matsuoka_et_al_2004.function.chemical により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.matsuoka_et_al_2004.molecule により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.matsuoka_et_al_2004.molecule.RespiratoryChain により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.matsuoka_et_al_2004.molecule.Transporter により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.matsuoka_et_al_2004.molecule.buffer により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.matsuoka_et_al_2004.molecule.enzyme により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.negroni_lascano_1996 により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.negroni_lascano_1996.exp により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.oka_et_al_2006.function により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.oka_et_al_2006.function.kinetics により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
IResetBeforeCalc
          Mark for Reactor to reset before calculation
計算開始時にクリアする必要のあるリアクターにつけるマーク。
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.oka_et_al_2006.structure により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.sarai_et_al_2006.function により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.sarai_noma_2004 により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.sarai_noma_2004.fourState により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.takeuchi_et_al_2006.current により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.takeuchi_et_al_2006.function により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.tenTusscher_et_al_2004.current により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.tenTusscher_et_al_2004.flux により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.tenTusscher_et_al_2004.function により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.terashima_et_al_2006.complex により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.terashima_et_al_2006.current.carrier により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.terashima_et_al_2006.current.cf により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.terashima_et_al_2006.current.potassium により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.terashima_et_al_2006.experiment により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.bio.terashima_et_al_2006.function により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
 

org.simBio.core により使用される org.simBio.core のクラス
CalculationObserver
          Conductor が計算を開始・終了した時に、監視オブジェクトに通知を行います。
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Initializer
          Keep values to initialize Component.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Reactor
          set of equations.
ReactorList
          List of the Reactors
Visitor
          Visitor pattern.
 

org.simBio.core.integrator により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Initializer
          Keep values to initialize Component.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Variable
           
VariableList
          include euler engine & dt adjuster
 

org.simBio.serialize により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Visitor
          Visitor pattern.
 

org.simBio.serialize.xml により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
 

org.simBio.sim.analyzer により使用される org.simBio.core のクラス
Analyzer
          Please inherit this Class to manipulate every Node.
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
 

org.simBio.sim.analyzer.csv により使用される org.simBio.core のクラス
Analyzer
          Please inherit this Class to manipulate every Node.
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
Visitor
          Visitor pattern.
 

org.simBio.sim.analyzer.csv.result により使用される org.simBio.core のクラス
Analyzer
          Please inherit this Class to manipulate every Node.
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
 

org.simBio.sim.analyzer.graph により使用される org.simBio.core のクラス
Analyzer
          Please inherit this Class to manipulate every Node.
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
 

org.simBio.sim.analyzer.graph.results により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
 

org.simBio.sim.analyzer.graph.simple により使用される org.simBio.core のクラス
Analyzer
          Please inherit this Class to manipulate every Node.
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
 

org.simBio.sim.analyzer.measure により使用される org.simBio.core のクラス
Analyzer
          Please inherit this Class to manipulate every Node.
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
 

org.simBio.sim.gui により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Conductor
          root instance to conduct integration.
Visitor
          Visitor pattern.
 

org.simBio.sim.ps により使用される org.simBio.core のクラス
CalculationObserver
          Conductor が計算を開始・終了した時に、監視オブジェクトに通知を行います。
Conductor
          root instance to conduct integration.
 

org.simBio.util により使用される org.simBio.core のクラス
Composite
          Composite Pattern.
 

org.simBio.util.numerical により使用される org.simBio.core のクラス
Component
          super class of the core package, similar to public String, Component of the Composite Pattern.
Composite
          Composite Pattern.
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
Parameter
          labeled public double, Component of the Composite Pattern.
 

org.simBio.util.numerical.methods により使用される org.simBio.core のクラス
Node
          variables that are used in the equations, and which can make link,
方程式セットに含まれる変数。
 

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