org.simBio.bio.matsuoka_et_al_2004.function
Class ConcentrationCyta2
java.lang.Object
org.simBio.core.Component
org.simBio.core.Parameter
org.simBio.core.Composite
org.simBio.core.Reactor
org.simBio.bio.matsuoka_et_al_2004.function.ConcentrationCyta2
- All Implemented Interfaces:
- Node
public class ConcentrationCyta2
- extends Reactor
Calculation of the concentration of Cytochrome a2+
[Cyt a2+] = [Cyt a]total/(1 + A_3/2)
where;
A_3/2 = 10^((Ema - Ema0)/Z) :ratio of oxidized cytochrome a3 to reduced cytochrome a3
- Since:
- rc20
- Version:
- $Log: ConcentrationCyta2.java,v $
Revision 1.1 2005/11/01 06:32:39 mikaelwing
First version of simBio hosted on sourceforge, version 0.3
Revision 1.1 2005/09/12 04:57:24 sarai
rearrenge folder structure as a Maven style
Revision 1.2 2005/08/04 08:43:04 sarai
revise Javadoc to suppress Warnings
2005/02/01 08:51:20 Some comments were updated to make Javadoc.
2004/12/17 05:43:03 update
2004/09/16 10:32:07 Created
- Author:
- SAITO Ryuta
- See Also:
- Matsuoka et al. (2004)
Korzeniewski & Zoladz (2001)
ConcentrationCyta XML example
explanation (Japanese, WORD doc)
Field Summary |
Node |
Ema
redox potential of cytochrome a |
double |
Ema0
standard free-energy change |
double |
total
total concentration of cytochrome a |
Node |
Zvalue
Z = 2.303 * R * T / F |
Method Summary |
protected void |
calculate(double t)
write equations here, and calculate dy over dt. |
Methods inherited from class org.simBio.core.Component |
addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Ema
public Node Ema
- redox potential of cytochrome a
Ema0
public double Ema0
- standard free-energy change
total
public double total
- total concentration of cytochrome a
Zvalue
public Node Zvalue
- Z = 2.303 * R * T / F
ConcentrationCyta2
public ConcentrationCyta2()
calculate
protected void calculate(double t)
- Description copied from class:
Reactor
- write equations here, and calculate dy over dt.
計算中に呼び出される。
計算式を記載する。dy/dtをここで計算する。
- Specified by:
calculate
in class Reactor
- Parameters:
t
- elapsed time (ms)
Copyright © 2005 Cell/Biodinamics simulation project. All Rights Reserved.