org.simBio.bio.matsuoka_et_al_2003.complex
Class ATPsynthesis
java.lang.Object
org.simBio.core.Component
org.simBio.core.Parameter
org.simBio.core.Composite
org.simBio.core.Reactor
org.simBio.bio.matsuoka_et_al_2003.complex.ATPsynthesis
- All Implemented Interfaces:
- Node
public class ATPsynthesis
- extends Reactor
The lumped model of ATP synthesis.
[ADP] = totalAdenosine - [ATP]
d[ATP] / dt = maxProducingRate * [ADP]
- Version:
- $Id: ATPsynthesis.java,v 1.2 2006/06/17 05:36:51 nsarai Exp $
- Author:
- Nobuaki Sarai
- See Also:
- Equation (11) and (12) of Table 3 in Matsuoka et al, 2003
XML example
explanation (Japanese)
explanation (Japanese, WORD doc)
Field Summary |
Node |
ATP
ATP concentration ([ATP]). |
double |
maxProducingRate
max rate of ATP production (/msec). |
double |
totalAdenosine
total adenosine concentration (= [ATP] + [ADP]) (mM). |
Method Summary |
protected void |
calculate(double t)
write equations here, and calculate dy over dt. |
Methods inherited from class org.simBio.core.Component |
addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
ATP
public Node ATP
- ATP concentration ([ATP]).
usually linked to the intracellular [ATP] (mM).
maxProducingRate
public double maxProducingRate
- max rate of ATP production (/msec).
totalAdenosine
public double totalAdenosine
- total adenosine concentration (= [ATP] + [ADP]) (mM).
ATPsynthesis
public ATPsynthesis()
calculate
protected void calculate(double t)
- Description copied from class:
Reactor
- write equations here, and calculate dy over dt.
計算中に呼び出される。
計算式を記載する。dy/dtをここで計算する。
- Specified by:
calculate
in class Reactor
- Parameters:
t
- elapsed time (ms)- See Also:
Reactor.calculate(double)
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