org.simBio.bio.kuzumoto_et_al_2007.function
Class ConcentrationAMP
java.lang.Object
org.simBio.core.Component
org.simBio.core.Parameter
org.simBio.core.Composite
org.simBio.core.Reactor
org.simBio.bio.matsuoka_et_al_2004.function.MassConservation2
org.simBio.bio.kuzumoto_et_al_2007.function.ConcentrationAMP
- All Implemented Interfaces:
- Node
public class ConcentrationAMP
- extends MassConservation2
calculation of AMP concentration (conformed to mass conservation law).
[Adenosine]total_cell = [ATP]cell + [ADP]cell + [AMP] + [cAMP]
[AMP] = [Adenosine]total_cell - [ATP]cell - [ADP]cell - [cAMP]
- Version:
- $Id: ConcentrationAMP.java,v 1.1 2007/12/15 07:21:54 nsarai Exp $
- Author:
- SAITO Ryuta
- See Also:
- Kuzumoto et al, 2007.,
Matsuoka et al. 2004.,
Korzeniewski & Zoladz 2001.,
XML example,
explanation (Japanese, WORD doc)
Method Summary |
protected void |
calculate(double t)
write equations here, and calculate dy over dt. |
Methods inherited from class org.simBio.core.Component |
addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
ATPtotal
public Node ATPtotal
ADPtotal
public Node ADPtotal
cAMP
public Node cAMP
TotalAdenosine
public double TotalAdenosine
- total adenosine concentration
ConcentrationAMP
public ConcentrationAMP()
calculate
protected void calculate(double t)
- Description copied from class:
Reactor
- write equations here, and calculate dy over dt.
計算中に呼び出される。
計算式を記載する。dy/dtをここで計算する。
- Overrides:
calculate
in class MassConservation2
- Parameters:
t
- elapsed time (ms)
Copyright © 2005 Cell/Biodinamics simulation project. All Rights Reserved.