org.simBio.bio.terashima_et_al_2006.function
Class TotalVolume
java.lang.Object
org.simBio.core.Component
org.simBio.core.Parameter
org.simBio.core.Composite
org.simBio.core.Reactor
org.simBio.bio.terashima_et_al_2006.function.TotalVolume
- All Implemented Interfaces:
- Node
public class TotalVolume
- extends Reactor
Calculate total cell volume from cell volume accessible for ion diffusion.
- Version:
- $Log: TotalVolume.java,v $
Revision 1.1 2005/11/01 06:32:40 mikaelwing
First version of simBio hosted on sourceforge, version 0.3
Revision 1.1 2005/10/17 07:53:05 mikael
Moved from branch dev_terashima_et_al_2005
Revision 1.1.2.2 2005/07/01 12:21:55 sarai
revised Javadoc
Revision 1.1.2.1 2005/06/30 08:21:07 sarai calculate total cell volume, separated from VolumeRatio
- Author:
- Sarai
- See Also:
- TotalVolume.xml for example
Field Summary |
Node |
Vi
the osmotically active cell volume (um^3) |
double |
Vn
the osmotically inactive cell volume (um^3) |
Method Summary |
protected void |
calculate(double t)
calculate value = Vt. |
protected void |
end()
Update the value at the end of calculation. |
protected void |
prepare()
Keep initial volume. |
Methods inherited from class org.simBio.core.Component |
addDydt, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Vi
public Node Vi
- the osmotically active cell volume (um^3)
Vn
public double Vn
- the osmotically inactive cell volume (um^3)
TotalVolume
public TotalVolume()
prepare
protected void prepare()
- Keep initial volume.
- Overrides:
prepare
in class Parameter
- See Also:
Parameter.prepare()
calculate
protected void calculate(double t)
- calculate value = Vt.
- Specified by:
calculate
in class Reactor
- Parameters:
t
- elapsed time (ms)- See Also:
Reactor.calculate(double)
end
protected void end()
- Update the value at the end of calculation.
- Overrides:
end
in class Component
- See Also:
Component.end()
Copyright © 2005 Cell/Biodinamics simulation project. All Rights Reserved.