org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca
Class ODE
java.lang.Object
org.simBio.core.Component
org.simBio.core.Parameter
org.simBio.core.Composite
org.simBio.core.Reactor
org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Buffer
org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.ODE
- All Implemented Interfaces:
- Node
public class ODE
- extends Buffer
Ca buffer, using ordinary differential equation (ODE).
- Version:
- $Id: ODE.java,v 1.3 2007/09/10 06:33:04 nsarai Exp $
- Author:
- Nobuaki Sarai
Field Summary |
double |
alpha
association constant (/ms) |
Node |
Ca
free Ca2+ concentration (mM) |
double |
Km
Michaelis constant (mM) |
Fields inherited from class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Buffer |
free, total |
Constructor Summary |
ODE()
|
Method Summary |
protected void |
calculate(double t)
write equations here, and calculate dy over dt. |
protected void |
prepare()
親が自分と同じ名前のpublic doubleを持っていれば、自分の値を設定する。 |
Methods inherited from class org.simBio.core.Component |
addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Ca
public Node Ca
- free Ca2+ concentration (mM)
Km
public double Km
- Michaelis constant (mM)
alpha
public double alpha
- association constant (/ms)
ODE
public ODE()
calculate
protected void calculate(double t)
- Description copied from class:
Reactor
- write equations here, and calculate dy over dt.
計算中に呼び出される。
計算式を記載する。dy/dtをここで計算する。
- Specified by:
calculate
in class Reactor
- Parameters:
t
- elapsed time (ms)
prepare
protected void prepare()
- Description copied from class:
Parameter
- 親が自分と同じ名前のpublic doubleを持っていれば、自分の値を設定する。
- Overrides:
prepare
in class Parameter
- See Also:
Component.prepare()
Copyright © 2005 Cell/Biodinamics simulation project. All Rights Reserved.