org.simBio.bio.matsuoka_et_al_2004.molecule.buffer
Class HBuffering
java.lang.Object
org.simBio.core.Component
org.simBio.core.Parameter
org.simBio.core.Composite
org.simBio.core.Reactor
org.simBio.bio.matsuoka_et_al_2004.molecule.buffer.HBuffering
- All Implemented Interfaces:
- Node
public class HBuffering
- extends Reactor
Buffering capacity coefficient for H+ (rbuffer).
rbuffer = cbuffer / c0
where;
c0 = (10^(- pH) - 10^(- pH - dpH)) / dpH
dpH = 0.001
- Since:
- rc20
- Version:
- $Id: HBuffering.java,v 1.5 2006/05/30 07:16:39 nsarai Exp $
- Author:
- SAITO Ryuta
- See Also:
- Korzeniewski B & Zoladz JA, Biophys. Chem., 92, 17-34, 2001
Korzeniewski B & Zoladz JA, Jpn. J. Physiol., 53, 271-280, 2003
XML example
explanation (Japanese, WORD doc)
Field Summary |
double |
cbuffer
Buffering capacity for H+ (cbuffer). |
Node |
pH
a measure of the activity of hydrogen ions (H+) in a solution |
Method Summary |
protected void |
calculate(double t)
calculate and set the value of rbuffer. |
Methods inherited from class org.simBio.core.Component |
addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
pH
public Node pH
- a measure of the activity of hydrogen ions (H+) in a solution
cbuffer
public double cbuffer
- Buffering capacity for H+ (cbuffer).
22.0 (mM Proton / pH) in matrix,
25.0 (mM Proton / pH) in cytosol.
HBuffering
public HBuffering()
calculate
protected void calculate(double t)
- calculate and set the value of rbuffer.
- Specified by:
calculate
in class Reactor
- Parameters:
t
-
Copyright © 2005 Cell/Biodinamics simulation project. All Rights Reserved.