org.simBio.bio.matsuoka_et_al_2004.molecule.RespiratoryChain
Class ComplexI
java.lang.Object
org.simBio.core.Component
org.simBio.core.Parameter
org.simBio.core.Composite
org.simBio.core.Reactor
org.simBio.bio.matsuoka_et_al_2004.molecule.RespiratoryChain.ComplexI
- All Implemented Interfaces:
- Node
public class ComplexI
- extends Reactor
NADH-Ubiquinone oxidoreductase (complex I).
vC1 = kC1 * dG_C1
dG_C1 = EmU - EmN - dP * 4 / 2 : Thermodynamic span of complex I
where;
EmN = EmN0 + Z/2*log([NAD+]/[NADH]): calculated in RedoxPotential.java
EmU = EmU0 + Z/2*log([UQ]/[UQH2]) : calculated in RedoxPotential.java
- Version:
- $Id: ComplexI.java,v 1.2 2007/11/22 06:48:21 nsarai Exp $
- Author:
- SAITO Ryuta
- See Also:
- Matsuoka et al. (2004)
Korzeniewski & Zoladz (2001)
Korzeniewski & Zoladz (2003)
XML example
explanation (Japanese, WORD doc)
Field Summary |
double |
Amp
amplifying factor described in
Kuzumoto et al, 2007. |
Node |
dP
proton driving force on mitochondrial inner membrane |
Node |
EmN
redox potential for NADH |
Node |
EmU
redox potential for ubiquinone |
double |
kC1
rate constant of complex I |
Method Summary |
protected void |
calculate(double t)
write equations here, and calculate dy over dt. |
Methods inherited from class org.simBio.core.Component |
addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
EmN
public Node EmN
- redox potential for NADH
EmU
public Node EmU
- redox potential for ubiquinone
dP
public Node dP
- proton driving force on mitochondrial inner membrane
kC1
public double kC1
- rate constant of complex I
Amp
public double Amp
- amplifying factor described in
Kuzumoto et al, 2007.
ComplexI
public ComplexI()
calculate
protected void calculate(double t)
- Description copied from class:
Reactor
- write equations here, and calculate dy over dt.
計算中に呼び出される。
計算式を記載する。dy/dtをここで計算する。
- Specified by:
calculate
in class Reactor
- Parameters:
t
- elapsed time (ms)
Copyright © 2005 Cell/Biodinamics simulation project. All Rights Reserved.