org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca
Class Analytic_RK
java.lang.Object
org.simBio.core.Component
org.simBio.core.Parameter
org.simBio.core.Composite
org.simBio.core.Reactor
org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Buffer
org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.Analytic_RK
- All Implemented Interfaces:
- Node
public class Analytic_RK
- extends Buffer
instantaneous Ca buffer using analytic equation as for Zeng et al, 1995.
has a value of [buffer-Ca].
- Version:
- $Id: Analytic_RK.java,v 1.5 2007/10/15 08:45:51 nsarai Exp $
- Author:
- Nobuaki Sarai, Kim
- See Also:
- Zeng et al, 1995
XML example
explanation (Japanese, WORD doc)
Field Summary |
Node |
Ca
free calcium concentration (mM) |
Node |
CaTotal
total calcium concentration (free calcium + buffered calcium + influx/efflux calcium) (mM) |
double |
Km
buffering kinetics (mM) |
Fields inherited from class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Buffer |
free, total |
Method Summary |
protected void |
calculate(double t)
write equations here, and calculate dy over dt. |
Methods inherited from class org.simBio.core.Component |
addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Km
public double Km
- buffering kinetics (mM)
Ca
public Node Ca
- free calcium concentration (mM)
CaTotal
public Node CaTotal
- total calcium concentration (free calcium + buffered calcium + influx/efflux calcium) (mM)
Analytic_RK
public Analytic_RK()
calculate
protected void calculate(double t)
- Description copied from class:
Reactor
- write equations here, and calculate dy over dt.
計算中に呼び出される。
計算式を記載する。dy/dtをここで計算する。
- Specified by:
calculate
in class Reactor
- Parameters:
t
- elapsed time (ms)
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