org.simBio.bio.terashima_et_al_2006.complex
クラス WaterFlux

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.terashima_et_al_2006.complex.WaterFlux

すべての実装されたインタフェース:

Node

public class WaterFlux
extends Reactor

Water flux across the cell membrane [um³/ms].

バージョン:

$Log: WaterFlux.java,v $ Revision 1.1 2005/11/01 06:32:40 mikaelwing First version of simBio hosted on sourceforge, version 0.3 Revision 1.1 2005/10/17 07:53:07 mikael Moved from branch dev_terashima_et_al_2005 Revision 1.1.2.7 2005/07/01 11:55:43 sarai revised Javadoc
2005/07/01 02:50:58 Sarai hydraulic conductivity is added, and put links
2005/06/17 01:59:49 Takeuchi The javadoc comments are revised.
2005/06/10 06:15:15 Sarai moved to simBio branch dev_terashima_et_al_2005
2005/06/08 06:23:26 Sarai Remove volume ratio calculation from WaterFlux

作成者:

Keisuke Terashima

関連項目:

WaterFlux.ja.doc (Japanese, WORD doc) Sasaki et al, 1999

フィールドの概要

Node	Caext concentration of extracellular Ca2+ [mM]
Node	Caint concentration of intracellular Ca2+ [mM]
Node	Clext concentration of extracellular Cl- [mM]
Node	Clint concentration of intracellular Cl- [mM]
double	Cm membrane capacitance [pF]
Node	Kext concentration of extracellular K+ [mM]
Node	Kint concentration of intracellular K+ [mM]
Node	LAext concentration of extracellular large anionic compound [mM]
Node	LAint concentration of intracellular large anionic compound [mM]
Node	Naext concentration of extracellular Na+ [mM]
Node	Naint concentration of intracellular Na+ [mM]
Node	TotalIonext sum of extracellular ionic concentration [mM]
Node	TotalIonint sum of intracellular ionic concentration [mM]
Node	volumeext extracellular volume [um3]
Node	volumeint intracellular volume [um3]

クラス org.simBio.core.Parameter から継承されたフィールド

value

コンストラクタの概要

WaterFlux()

メソッドの概要

protected void

calculate(double t) write equations here, and calculate dy over dt.

クラス org.simBio.core.Composite から継承されたメソッド

accept, getLink, getNode, getNodesIterator, getNodesSize

クラス org.simBio.core.Parameter から継承されたメソッド

addValue, getValue, getValueString, prepare, setInitializer, setValue, setValueString, setValueToField

クラス org.simBio.core.Component から継承されたメソッド

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

クラス java.lang.Object から継承されたメソッド

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

インタフェース org.simBio.core.Node から継承されたメソッド

addDydt, addValue, getValue, setValue

フィールドの詳細

Naint

public Node Naint

concentration of intracellular Na⁺ [mM]

Kint

public Node Kint

concentration of intracellular K⁺ [mM]

Clint

public Node Clint

concentration of intracellular Cl^- [mM]

Caint

public Node Caint

concentration of intracellular Ca²⁺ [mM]

LAint

public Node LAint

concentration of intracellular large anionic compound [mM]

Naext

public Node Naext

concentration of extracellular Na⁺ [mM]

Kext

public Node Kext

concentration of extracellular K⁺ [mM]

Clext

public Node Clext

concentration of extracellular Cl^- [mM]

Caext

public Node Caext

concentration of extracellular Ca²⁺ [mM]

LAext

public Node LAext

concentration of extracellular large anionic compound [mM]

volumeint

public Node volumeint

intracellular volume [um³]

volumeext

public Node volumeext

extracellular volume [um³]

TotalIonint

public Node TotalIonint

sum of intracellular ionic concentration [mM]

TotalIonext

public Node TotalIonext

sum of extracellular ionic concentration [mM]

Cm

public double Cm

membrane capacitance [pF]

コンストラクタの詳細

WaterFlux

public WaterFlux()

メソッドの詳細

calculate

protected void calculate(double t)

クラス Reactor の記述:

write equations here, and calculate dy over dt.
計算中に呼び出される。 計算式を記載する。dy/dtをここで計算する。

定義:

クラス Reactor 内の calculate

パラメータ:

t - elapsed time (ms)